Hello Casey, I am very sorry that you encountered this problem. Please contact Esri Support, via our webwite, and even if you do not have a Maintenance contact with Esri for your software use the "Log a bug" option, refer to BUG-000152672 and provide answers to the following questions. Esri developers are working on this issue to find a solution. Thank you!
1] ArcGIS Pro version
2] Computer operating system where the problem occurred.
3] Data Interoperability Build number (open Workbench in Pro > Help > About Data Interability - Build number will display).
4] Is FME also installed on the computer along with Data Interoperability?
5] Which specific transformers are included in the Spatial ETL tool?
6] What is the ETL tool reading from and writing to?
7] Is the input data that is being read local or over the network?
8] Is the output data that is being written local or over the network?