I remember that I have followed this steps:
- create a new application
- see the folders missing in C:\inetpub\wwwroot\Apps\appwithproblem\Culture with C:\inetpub\wwwroot\Apps\newapplication\Culture
- copy in C:\inetpub\wwwroot\Apps\appwithproblem\Culture the folders missing from C:\inetpub\wwwroot\Apps\newapp\Culture
-return in builder and click on buttom upgrade