With One way replication this is a known problem in 10.1 we are in contact with ESRI to resolve it but nothing yet.
Until they do here is a workaround this seems to compress the tree to state 0 and move all delta edits to the base tables.
We do this workaround on a weekly basis
With One way replication this is a known problem in 10.1 we are in contact with ESRI to resolve it but nothing yet.