Matthew,
Beyond the tool question itself, is the end result/need you have to look at your sewer system to make sure there are no overflows during peak times, and if so, find those trouble areas to recommend improving? If yes, I would encourage you to check with your engineering/planning group to see if they can assist with any hydraulic modeling tools to test the different scenarios. There will be an impact on inflow and infiltration through small leaks in sewer system elements during storm events and from groundwater, that would have a cumulative impact on final sanitary peak flow volumes (they could assist on selecting storm events to model, condition of system to model etc). Such modeling software can help account for those factors, design pipe sizes, and output the required system changes to meet future conditions so you can graphically compare current/new.
You mentioned in the post you had more questions - feel free to add/ask!
Respectfully,
Martin