That should give you a dialog similar to this.
Unable to find a suitable version for dojo, please choose one:
1) dojo#v1.10.4/esri-3.14.0 which resolved to v1.10.4/esri-3.14.0 and is required by arcgis-js-api#3.16.0
2) dojo#>=1.8.1 which resolved to 1.10.4 and is required by dstore#1.1.0
Prefix the choice with ! to persist it to bower.json
? Answer
Enter "!1" and it will save your choice in the bower.json file.
You could set up a bower.json ahead of time like the one here.
https://github.com/Esri/jsapi-resources/blob/master/bower/dojo/bower.json
That could help.
Thanks!