Brian Wade When you run the iterator linked to get count as Duncan Hornby instructed, write the values to a gdb table. Pass the feature class name of the iterator as the field name, and field calculate the %get count% value. If you want to view it outside of Arc in a csv, then add a table to table tool to export that QA table to a csv. You'd need to nest the above as a submodel so that the csv isn't written until the end.
This would give you a field for every feature class name, and 1 row with the value from get count. If you want to view it vertically instead of horizontally, add in the transpose tool in the main model before the csv export.
I haven't tried this with get count tool, but I've used it for a very similar situation. Be the gineau pig!